aigct.repo_qc

Classes

VEDataValidator

Module Contents

class aigct.repo_qc.VEDataValidator(variant_effect_label_repo: aigct.repository.VariantEffectLabelRepository, variant_repo: aigct.repository.VariantRepository, variant_task_repo: aigct.repository.VariantTaskRepository, variant_effect_source_repo: aigct.repository.VariantEffectSourceRepository, variant_effect_score_repo: aigct.repository.VariantEffectScoreRepository, variant_filter_repo: aigct.repository.VariantFilterRepository)[source]

_variant_effect_label_repo[source]

_variant_repo[source]

_variant_task_repo[source]

_variant_effect_source_repo[source]

_variant_effect_score_repo[source]

_variant_filter_repo[source]

_validate_pk(df: pandas.DataFrame, pk_columns: list[str]) → pandas.DataFrame[source]

validate_pks()[source]